TFtargs {TFutils}R Documentation

gadget to help sort through tags naming TFs

Description

gadget to help sort through tags naming TFs

Usage

TFtargs(
  gscoll = TFutils::tftColl,
  initTF = "VDR_Q3",
  gwcat = TFutils::gwascat_hg19_chr17,
 
    gadtitle = "Search for a TF; its targets will be checked for mapped status in GWAS catalog"
)

Arguments

gscoll

a GSEABase GeneSetCollection

initTF

character(1) initial TF string for app

gwcat

GRanges-like structure with GWAS catalog information

gadtitle

character(1) a title for the gadget panel

Value

on app conclusion a data.frame is returned

Note

Will use TFutils::gwascat_hg19_chr17 to look for 'MAPPED_GENE' field entries matching targets, also hardcoded to use org.Hs.eg.db to map symbols

Examples

if (interactive()) TFtargs()

[Package TFutils version 1.13.4 Index]