grabTab {TFutils} | R Documentation |
create table of TF targets and related metadata
grabTab( tfstub = "STAT1", gscoll = TFutils::tftColl, orgdb = org.Hs.eg.db::org.Hs.eg.db, gwrngs = TFutils::gwascat_hg19_chr17 )
tfstub |
character(1) gene-like symbol for TF; will be grepped in names(gscoll) |
gscoll |
a GSEABase GeneSetCollection |
orgdb |
an instance of OrgDb as defined in AnnotationDbi |
gwrngs |
a GRanges representing EBI gwascat, must have |
data.frame instance
This function will link together information on targets of a given TF to the GWAS catalog.
gt = grabTab("VDR", gscoll=TFutils::tftColl, orgdb=org.Hs.eg.db::org.Hs.eg.db, gwrngs=TFutils::gwascat_hg19_chr17) dim(gt) head(gt)