plot_RES {TFEA.ChIP} | R Documentation |
Function to plot all the RES stored in a GSEA_run output.
plot_RES( GSEA_result, LFC, plot_title = NULL, line.colors = NULL, line.styles = NULL, Accession = NULL, TF = NULL )
GSEA_result |
Returned by GSEA_run |
LFC |
Vector with log2(Fold Change) of every gene that has an Entrez ID. Arranged from higher to lower. |
plot_title |
(Optional) Title for the plot. |
line.colors |
(Optional) Vector of colors for each line. |
line.styles |
(Optional) Vector of line styles for each line ('solid'/'dash'/'longdash'). |
Accession |
(Optional) restricts plot to the indicated list dataset IDs. |
TF |
(Optional) restricts plot to the indicated list transcription factor names. |
Plotly object with a line plot -running sums- and a heatmap -log2(fold change) bar-.
data('GSEA.result','log2.FC',package = 'TFEA.ChIP') plot_RES(GSEA.result,log2.FC,TF=c('GATA3'), Accession=c('ENCSR000BMX.GATA3.T47D', 'ENCSR000EVW.GATA2.ENDOTHELIAL_UMBILICAL_VEIN'))