sampleRanges {TFBSTools} | R Documentation |
Sample ranges with same widths of input rannges from a set of subject ranges.
sampleRanges(inputGRanges, subjectGRanges, ignore.strand=TRUE)
inputGRanges |
The input |
subjectGRanges |
The subject |
ignore.strand |
When set to |
A GRanges
object with the same length and widths of
inputGRanges
.
Ge Tan
library(GenomicRanges) inputGRanges <- GRanges(seqnames=c("chr1", "chr2"), range=IRanges(start=c(2L, 10L), end=c(6L, 15L)), strand=c("+", "-")) subjectGRanges <- GRanges( seqnames=c("chr1", "chr1", "chr1", "chr1", "chr2", "chr2"), ranges=IRanges(start=c(20L, 20L, 30L, 30L, 7L, 25L), end=c(50L, 50L, 32L, 32L,9L, 55L)), strand=c("+","-", "+", "-", "+","-")) set.seed(16) sampleRanges(inputGRanges, subjectGRanges, ignore.strand=TRUE) sampleRanges(inputGRanges, subjectGRanges, ignore.strand=FALSE)