getEmissionProb {TFBSTools} | R Documentation |
This function accesses the emission distribution parameters of the TFFM.
getEmissionProb(tffm)
tffm |
A |
This function accesses the emission distribution parameters for each position of the TFFM. It returns the probability of emitting certain nucleotide based on the nucleotide on the previous site.
A matrix of numeric
with dimensions of 16 * ncol(tffm)
.
Ge Tan
xmlFirst <- file.path(system.file("extdata", package="TFBSTools"), "tffm_first_order.xml") tffmFirst <- readXMLTFFM(xmlFirst, type="First") getEmissionProb(tffmFirst) xmlDetail <- file.path(system.file("extdata", package="TFBSTools"), "tffm_detailed.xml") tffmDetail <- readXMLTFFM(xmlDetail, type="Detail") getEmissionProb(tffmDetail)