TCGAprimaryTumors {TCGAutils}R Documentation

Select primary tumors from TCGA datasets

Description

Tumor selection is decided using the ‘sampleTypes' data. For ’LAML' datasets, the primary tumor code used is "03" otherwise, "01" is used.

Usage

TCGAprimaryTumors(multiassayexperiment)

Arguments

multiassayexperiment

A MultiAssayExperiment with TCGA data as obtained from curatedTCGAData

Value

A MultiAssayExperiment containing only primary tumor samples

Examples


example(getSubtypeMap)

TCGAprimaryTumors(gbm)


[Package TCGAutils version 1.14.0 Index]