mergeColData {TCGAutils}R Documentation

Take a MultiAssayExperiment and include curated variables

Description

This function works on the colData of a MultiAssayExperiment object to merge curated variable columns or other clinical variables that would like to be added. It is recommended that the user run the scripts in the MultiAssayExperiment-TCGA repository that build the "enhanced" type of data but not necessary if using different clinical data. Please see the repository's README for more information.

Usage

mergeColData(MultiAssayExperiment, colData)

Arguments

MultiAssayExperiment

A MultiAssayExperiment object

colData

A DataFrame or data.frame to merge with clinical data in the MultiAssayExperiment object

Value

A MultiAssayExperiment object

Examples


library(MultiAssayExperiment)

mergeColData(MultiAssayExperiment(), S4Vectors::DataFrame())


[Package TCGAutils version 1.14.0 Index]