GDCquery_clinic {TCGAbiolinks} | R Documentation |
GDCquery_clinic will download all clinical information from the API as the one with using the button from each project
GDCquery_clinic(project, type = "clinical", save.csv = FALSE)
project |
A valid project (see list with getGDCprojects()$project_id)]
|
type |
A valid type. Options "clinical", "Biospecimen" (see list with getGDCprojects()$project_id)] |
save.csv |
Write clinical information into a csv document |
A data frame with the clinical information
clin <- GDCquery_clinic("TCGA-ACC", type = "clinical", save.csv = TRUE) clin <- GDCquery_clinic("TCGA-ACC", type = "biospecimen", save.csv = TRUE) clin.cptac2 <- GDCquery_clinic("CPTAC-2", type = "clinical") clin.TARGET_ALL_P1 <- GDCquery_clinic("TARGET-ALL-P1", type = "clinical") clin.fm_ad <- GDCquery_clinic("FM-AD", type = "clinical") ## Not run: clin <- GDCquery_clinic(project = "CPTAC-3", type = "clinical") clin <- GDCquery_clinic(project = "CPTAC-2", type = "clinical") clin <- GDCquery_clinic(project = "HCMI-CMDC", type = "clinical") clin <- GDCquery_clinic(project = "NCICCR-DLBCL", type = "clinical") clin <- GDCquery_clinic(project = "ORGANOID-PANCREATIC", type = "clinical") ## End(Not run)