GDCquery_ATAC_seq {TCGAbiolinks} | R Documentation |
Retrieve open access ATAC-seq files from GDC server https://gdc.cancer.gov/about-data/publications/ATACseq-AWG Manifest available at: https://gdc.cancer.gov/files/public/file/ATACseq-AWG_Open_GDC-Manifest.txt
GDCquery_ATAC_seq(tumor = NULL, file.type = NULL)
tumor |
a valid tumor |
file.type |
Write maf file into a csv document |
A data frame with the maf file information
query <- GDCquery_ATAC_seq(file.type = "txt") ## Not run: GDCdownload(query) ## End(Not run) query <- GDCquery_ATAC_seq(tumor = "BRCA",file.type = "bigWigs") ## Not run: GDCdownload(query,method = "client") ## End(Not run)