TCGAanalyze_Pathview {TCGAbiolinks}R Documentation

Generate pathview graph

Description

TCGAanalyze_Pathview pathway based data integration and visualization.

Usage

TCGAanalyze_Pathview(dataDEGs, pathwayKEGG = "hsa05200")

Arguments

dataDEGs

dataDEGs

pathwayKEGG

pathwayKEGG

Value

an adjacent matrix

Examples

## Not run: 
  dataDEGs <- data.frame(mRNA = c("TP53","TP63","TP73"), logFC = c(1,2,3))
  TCGAanalyze_Pathview(dataDEGs)

## End(Not run)

[Package TCGAbiolinks version 2.22.2 Index]