UseRaw_afterFilter {TCGAbiolinks}R Documentation

Use raw count from the DataPrep object which genes are removed by normalization and filtering steps.

Description

function to keep raw counts after filtering and/or normalizing.

Usage

UseRaw_afterFilter(DataPrep, DataFilt)

Arguments

DataPrep

DataPrep object returned by TCGAanalyze_Preprocessing()

DataFilt

Filtered data frame containing samples in columns and genes in rows after normalization and/or filtering steps

Value

Filtered return object similar to DataPrep with genes removed after normalization and filtering process.

Examples

## Not run: 
  dataPrep_raw <- UseRaw_afterFilter(dataPrep, dataFilt)

## End(Not run)

[Package TCGAbiolinks version 2.22.1 Index]