calculateCoveredProtein {SubCellBarCode}R Documentation

Evaluate marker protein coverage

Description

Given the proteomics data, number of overlapped marker proteins is calculated. Bar plot for each compartment is plotted.

Usage

calculateCoveredProtein(proteinIDs, markerproteins)

Arguments

proteinIDs

character; gene symbol id

markerproteins

character; 3365 proteins gene symbol ids

Value

covered.proteins

Examples

{

df <- loadData(SubCellBarCode::hcc827Ctrl)

c.prots <- calculateCoveredProtein(rownames(df), markerProteins[,1])
}

[Package SubCellBarCode version 1.9.2 Index]