findInsDupOverlaps {StructuralVariantAnnotation} | R Documentation |
WARNING: this method does not check that the inserted sequence actually matched the duplicated sequence.
findInsDupOverlaps(query, subject, maxgap = -1L, maxsizedifference = 0L)
query |
a breakpoint GRanges object |
subject |
a breakpoint GRanges object |
maxgap |
maximum distance between the insertion position and the duplication |
maxsizedifference |
maximum size difference between the duplication and insertion. |
Hits object containing the ordinals of the matching breakends in the query and subject