plotcrosstalk {StarBioTrek}R Documentation

Preparation for plotting cross-talk

Description

plot_cross_talk function takes as input pathway data and prepares the data to visualize (e.g. ggplot2, qqgraph, igraph)

Usage

plotcrosstalk(pathway_plot, gs_expre)

Arguments

pathway_plot

pathway

gs_expre

a gene expression matrix

Value

a list with correlation matrix and gene set for each gene

Examples

formatplot<-plotcrosstalk(pathway_plot=pathway[1:6],gs_expre=tumo)

[Package StarBioTrek version 1.19.0 Index]