mutational-plots {SomaticSignatures}R Documentation

Mutational Plots

Description

Plots for variant analysis

Usage

plotVariantAbundance(x, group = NULL, alpha = 0.5, size = 2)

Arguments

x

A VRanges object [required].

group

Grouping variable, refers to a column name in 'x'. By default, no grouping is performed.

alpha

Alpha value for data points.

size

Size value for data points.

Details

The 'plotVariantAbundance' shows the variant frequency in relation to the total coverage at each variant position. This can be useful for examining the support of variant calls.

Value

A 'ggplot' object.


[Package SomaticSignatures version 2.29.0 Index]