ConversionRate {SingleMoleculeFootprinting} | R Documentation |
calculate sequencing library conversion rate on a chromosome of choice
ConversionRate(sampleSheet, genome, chr = 19, clObj = NULL)
sampleSheet |
QuasR sample sheet |
genome |
BS genome |
chr |
chromosome to calculate conversion rate on (default: 19) |
clObj |
cluster object to emply for parallel processing created using the parallel::makeCluster function. Defaults to NULL |
Conversion rate
Qinput = paste0(tempdir(), "/NRF1Pair_Qinput.txt") library(BSgenome.Mmusculus.UCSC.mm10) if(file.exists(Qinput)){ # DO NOT RUN # clObj = parallel::makeCluster(5) # ConversionRatePrecision = ConversionRate(sampleSheet = Qinput, genome = BSgenome.Mmusculus.UCSC.mm10, chr = 19, clObj = clObj) # parallel::stopCluster(clObj) }