classifyResults {SigCheck} | R Documentation |
sigCheckRandom
and sigCheckKnown
using the
breastCancerNKI
dataset.
This object represents the results lists returned by calls to
sigCheckRandom
and sigCheckKnown
.
It is used by the vignette accompanying the
SigCheck
package as an example result. It was derived by
running the code in the example below.
It loads to object, slassifyRandom
and classifyKnown
.
data(classifyResults)
## Not run: # This is how classifyResults is built library(breastCancerNKI) data(nki) nki = nki[,!is.na(nki$e.dmfs)] data(knownSignatures) check <- sigCheck(nki, classes="e.dmfs", signature=knownSignatures$cancer$VANTVEER, annotation="HUGO.gene.symbol", validationSamples=101:ncol(nki), scoreMethod="classifier") classifyRandom <- sigCheckRandom(check, iterations=1000) classifyKnown <- sigCheckKnown(check) ## End(Not run) # Example usage of classifyResults data(classifyResults) par(mfrow=c(1,2)) sigCheckPlot(classifyRandom, classifier=TRUE) sigCheckPlot(classifyKnown, classifier=TRUE)