SeqGSEA-package {SeqGSEA} | R Documentation |
SeqGSEA is an R package for gene set enrichment analysis of RNA-Seq data with the ability to integrate differential expression and differential splice in functional analysis.
Package: | SeqGSEA |
Type: | Package |
License: | GPL (>= 3) |
A User's Guide is available as well as the usual help page documentation for each of the individual functions.
The most useful functions are listed below:
* ReadCountSet class
* SeqGeneSet class
* Load data
* DE analysis
* DS analysis
* GSEA main
* Result tables
* Result displays
* Miscellaneous
Xi Wang and Murray J. Cairns
Maintainer: Xi Wang <xi.wang@newcastle.edu.au>
Xi Wang and Murray J. Cairns (2013). Gene Set Enrichment Analysis of RNA-Seq Data: Integrating Differential Expression and Splicing. BMC Bioinformatics, 14(Suppl 5):S16.