DENBTest {SeqGSEA} | R Documentation |
Perform negative binomial exact test for differential expression - a modified version of nbinomTest in DESeq package.
DENBTest(dds)
dds |
A DESeqDataSet object with size factors and dispersion parameters estimated. Recommended to take the output of |
A data frame of the test results. Information contains mean expression values, NB-statistics, (log) fold-changes, p-values, and adjusted p-values.
Xi Wang, xi.wang@newcastle.edu.au
Anders, S. and Huber, W. (2010) Differential expression analysis for sequence count data, Genome Biol, 11, R106.
data(RCS_example, package="SeqGSEA") geneCounts <- getGeneCount(RCS_example) label <- label(RCS_example) DEG <- runDESeq(geneCounts, label) DEGres <- DENBTest(DEG) head(DEGres)