ImputeTesting {Sconify}R Documentation

Impute testing

Description

Tests the euclidean distance error for imputation using knn and markers of interest

Usage

ImputeTesting(k.titration, cells, input.markers, test.markers)

Arguments

k.titration

a vector integer values of k to be tested

cells

a matrix of cells by features used as original input

input.markers

markers to be used for the knn calculation

test.markers

the markers to be tested for imputation (either surface or scone)

Value

the median imputation error for each value k tested

Examples

ImputeTesting(k.titration = c(10, 20),
  cells = wand.combined,
  input.markers = input.markers,
  test.markers = funct.markers)

[Package Sconify version 1.13.0 Index]