get_enrichment {STRINGdb} | R Documentation |
Returns the enrichment in pathways of the vector of STRING proteins that is given in input.
## S4 method for signature 'STRINGdb' get_enrichment(string_ids, category = "Process", methodMT = "fdr", iea = TRUE, minScore=NULL)
string_ids |
a vector of STRING identifiers. |
category |
category for which to compute the enrichment (i.e. "Process", "Component", "Function", "KEGG", "Pfam", "InterPro"). The default category is "Process". |
methodMT |
method to be used for the multiple testing correction. (i.e. "fdr", "bonferroni"). The default is "fdr". |
iea |
specify whether you also want to use electronic inference annotations |
minScore |
with Tissue and Disease categories is possible to filter the annotations having an annotation score higher than this threshold (from 0 to 5) |
Data frame containing the enrichment in pathways of the vector of STRING proteins that is given in input.
Andrea Franceschini