sponge_plot_network {SPONGE}R Documentation

Plot a sponge network

Description

Plot a sponge network

Usage

sponge_plot_network(sponge_result, mir_data,
  layout = "layout.fruchterman.reingold", force.directed = FALSE, ...)

Arguments

sponge_result

ceRNA interactions as produced by the sponge method.

mir_data

miRNA interactions as produced by sponge_gene_miRNA_interaction_filter

layout

one of the layout methods supported in the visNetwork package

force.directed

whether to produce a force directed network, gets slow for large networks

...

further params for sponge_network

Value

shows a plot

Examples

sponge_plot_network(ceRNA_interactions, mir_interactions)

[Package SPONGE version 1.16.0 Index]