splitPCRhit {SPLINTER}R Documentation

splitPCRhit

Description

splits the PCR alignment into the two AS conditions

Usage

splitPCRhit(res, hitlist)

Arguments

res

result from getPCRsizes

hitlist

findCompatibleEvents object

Value

list of 2 data.frame objects with isoform name (ID) and length of PCR product (bp) matching Type 1 or Type 2 transcripts

Author(s)

Diana Low

Examples

## as getPCRsizes gives you all PCR bands when the primers are used,
## splitPCRhit will determine which bands are relevant to the target
relevant_pcr_bands<-splitPCRhit(pcr_result1,compatible_tx)

[Package SPLINTER version 1.19.0 Index]