BuettnerFlorian {SIMLR}R Documentation

test dataset for SIMLR

Description

example dataset to test SIMLR from the work by Buettner, Florian, et al.

Usage

data(BuettnerFlorian)

Format

gene expression measurements of individual cells

Value

list of 6: in_X = input dataset as an (m x n) gene expression measurements of individual cells, n_clust = number of clusters (number of distinct true labels), true_labs = ground true of cluster assignments for each of the n_clust clusters, seed = seed used to compute the results for the example, results = result by SIMLR for the inputs defined as described, nmi = normalized mutual information as a measure of the inferred clusters compared to the true labels

Source

Buettner, Florian, et al. "Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells." Nature biotechnology 33.2 (2015): 155-160.


[Package SIMLR version 1.19.1 Index]