scObj {SCArray} | R Documentation |
Convert to SC_GDSArray for utilizing seed-aware DelayedArray functions.
scObj(obj, verbose=TRUE)
obj |
a SummarizedExperiment, SingleCellExperiment or DelayedArray object |
verbose |
if TRUE, show information |
Return an object with SC_GDSMatrix
/SC_GDSArray
.
Xiuwen Zheng
# a GDS file for SingleCellExperiment fn <- system.file("extdata", "LaMannoBrainData.gds", package="SCArray") cnt <- scArray(fn, "counts") cnt # it is SC_GDSMatrix logcnt <- log2(cnt + 1) logcnt # it is a general DelayedMatrix # convert to SC_GDSMatrix lcnt <- scObj(logcnt) lcnt