consensus_matrix {SC3}R Documentation

Calculate consensus matrix

Description

Consensus matrix is calculated using the Cluster-based Similarity Partitioning Algorithm (CSPA). For each clustering solution a binary similarity matrix is constructed from the corresponding cell labels: if two cells belong to the same cluster, their similarity is 1, otherwise the similarity is 0. A consensus matrix is calculated by averaging all similarity matrices.

Usage

consensus_matrix(clusts)

Arguments

clusts

a matrix containing clustering solutions in columns

Value

consensus matrix


[Package SC3 version 1.21.0 Index]