rnb.bed.from.segmentation {RnBeads}R Documentation

rnb.bed.from.segmentation

Description

This function creates a BED file from the segmentation result of rnb.execute.segmentation and stores it on disk.

Usage

rnb.bed.from.segmentation(
  rnb.set,
  sample.name,
  type = "final",
  store.path = getwd()
)

Arguments

rnb.set

An RnBSet-class object obtained by executing rnb.execute.segmentation.

sample.name

The sample name for which segmentation was computed.

type

The type of segmentation (PMDs, UMRs, LMRs, HMDs or final).

store.path

Path to which the BED file is to be stored.

Author(s)

Michael Scherer


[Package RnBeads version 2.12.0 Index]