plot_gsva_pathway {ReactomeGSA} | R Documentation |
Plots the expression of a specific pathway from a ssGSEA result.
plot_gsva_pathway(object, pathway_id, ...)
object |
The |
pathway_id |
The pathway's id |
... |
Additional parameters for specific implementations. |
A ggplot2 plot object
Other ReactomeAnalysisResult functions:
get_result()
,
names,ReactomeAnalysisResult-method
,
open_reactome()
,
pathways()
,
plot_correlations()
,
plot_gsva_heatmap()
,
plot_heatmap()
,
plot_volcano()
,
reactome_links()
,
result_types()
# load the scRNA-seq example data library(ReactomeGSA.data) data(jerby_b_cells) # perform the GSVA analysis gsva_result <- analyse_sc_clusters(jerby_b_cells, verbose = FALSE) # create the plot plot_obj <- plot_gsva_pathway(gsva_result, "R-HSA-389542")