getDbRegionsLoc {RcisTarget} | R Documentation |
Gets the region location based on the region ID. Only needed for drosophiladrosophila (fruit fly) regions.
For human/mouse the region locations are stored in a separate object (i.e. ). This function is not needed.
getDbRegionsLoc(featherFilePath, spltChr = "__", indexCol = NULL)
featherFilePath |
Path to the rankings database |
spltChr |
Character(s) used to split the prefix from the region location. The default is used for current Drosophila versions. Use NULL to skip. |
The region locations in a GRanges object, with the original region ID as name.
See the package vignette for examples and more details:
vignette("RcisTarget")
## Not run: featherFilePath <- "~/databases/dm6-regions-11species.mc9nr.feather" dbRegionsLoc <- getDbRegionsLoc(featherFilePath) ## End(Not run)