convertToTargetRegions {RcisTarget} | R Documentation |
Convert a set of input regions to the overlapping regions in the target set.
convertToTargetRegions( queryRegions, targetRegions, minOverlap = 0.4, overlapType = "any", returnCorrespondence = FALSE, verbose = TRUE )
queryRegions |
List of regions to convert (normally the query region set). |
targetRegions |
List of regions in the target set (normally the database). |
minOverlap |
Minimum overlap to consider (in either direction, default: 0.40). |
overlapType |
Parameter for |
returnCorrespondence |
Returns a table containing the matches, or only a list of overlapping regions (default: FALSE). |
verbose |
Print the number of regions selected? |
IDs of the regions in the "target regions" overlapping with the query regions.
See the package vignette for examples and more details:
vignette("RcisTarget")
## Not run: ## To apply on a list of regionSets: regionSets_db <- lapply(regionSets, function(x) convertToTargetRegions(queryRegions=x, targetRegions=dbRegionsLoc)) ## End(Not run)