avs.get {RTN}R Documentation

Get information from individual slots in an AVS object.

Description

Get information from individual slots in an AVS object.

Usage

avs.get(object, what="summary", report=FALSE, pValueCutoff=NULL)

Arguments

object

an object of class 'AVS' AVS-class.

what

a single character value specifying which information should be retrieved from the slots. Options: 'markers', 'validatedMarkers', 'variantSet', 'randomSet', 'linkedMarkers', 'randomMarkers', 'vse', 'evse', 'rvse', 'pevse', 'annotation.vse', 'annotation.evse', 'annotation.rvse', 'annotation.pevse', 'summary' and 'status'.

report

a single logical value indicating whether to return results from 'vse', 'evse' as a consolidated table (if TRUE), or as they are (if FALSE).

pValueCutoff

an optional single numeric value specifying the cutoff to retrive results for p-values considered significant.

Value

get the slot content from an object of class 'AVS' AVS-class.

Author(s)

Mauro Castro

Examples


## Not run: 
#This example requires the RTNdata package! (currently available under request)
library(RTNdata.LDHapMapRel27)
data(bcarisk, package="RTNdata.LDHapMapRel27")
bcavs <- avs.preprocess.LDHapMapRel27(bcarisk, nrand=1000)
avs.get(avs)

## End(Not run)

[Package RTN version 2.17.0 Index]