avs.get {RTN} | R Documentation |
Get information from individual slots in an AVS object.
avs.get(object, what="summary", report=FALSE, pValueCutoff=NULL)
object |
an object of class 'AVS' |
what |
a single character value specifying which information should be retrieved from the slots. Options: 'markers', 'validatedMarkers', 'variantSet', 'randomSet', 'linkedMarkers', 'randomMarkers', 'vse', 'evse', 'rvse', 'pevse', 'annotation.vse', 'annotation.evse', 'annotation.rvse', 'annotation.pevse', 'summary' and 'status'. |
report |
a single logical value indicating whether to return results from 'vse', 'evse' as a consolidated table (if TRUE), or as they are (if FALSE). |
pValueCutoff |
an optional single numeric value specifying the cutoff to retrive results for p-values considered significant. |
get the slot content from an object of class 'AVS' AVS-class
.
Mauro Castro
## Not run: #This example requires the RTNdata package! (currently available under request) library(RTNdata.LDHapMapRel27) data(bcarisk, package="RTNdata.LDHapMapRel27") bcavs <- avs.preprocess.LDHapMapRel27(bcarisk, nrand=1000) avs.get(avs) ## End(Not run)