datasetsTCGA {RTCGA} | R Documentation |
Snapshots of the clinical, mutations, CNVs, rnaseq, RPPA, mRNA, miRNASeq and methylation datasets from the 2015-11-01
release date (check all dates of release with checkTCGA('Dates')
) are included in the RTCGA.data
family (factory) that contains 9 packages:
RTCGA.rnaseq rnaseq
RTCGA.clinical clinical
RTCGA.mutations mutations
RTCGA.CNV CNV
RTCGA.RPPA RPPA
RTCGA.mRNA mRNA
RTCGA.miRNASeq miRNASeq
RTCGA.methylation methylation
RTCGA.PANCAN12 (not from TCGA)
For more detailed information visit RTCGA.data website https://rtcga.github.io/RTCGA. One can install all data packages with installTCGA.
If you have any problems, issues or think that something is missing or is not clear please post an issue on https://github.com/RTCGA/RTCGA/issues.
Marcin Kosinski [aut, cre] m.p.kosinski@gmail.com
Przemyslaw Biecek [aut] przemyslaw.biecek@gmail.com
Witold Chodor [aut] witoldchodor@gmail.com
RTCGA website http://rtcga.github.io/RTCGA.
Other RTCGA:
RTCGA-package
,
boxplotTCGA()
,
checkTCGA()
,
convertTCGA()
,
downloadTCGA()
,
expressionsTCGA()
,
heatmapTCGA()
,
infoTCGA()
,
installTCGA()
,
kmTCGA()
,
mutationsTCGA()
,
pcaTCGA()
,
readTCGA()
,
survivalTCGA()
,
theme_RTCGA()
# installation of packages containing snapshots # of TCGA project's datasets ## Not run: ## RTCGA GitHub development newest versions library(RTCGA) ?installTCGA ## Bioconductor releases if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install(RTCGA.clinical) BiocManager::install(RTCGA.mutations) BiocManager::install(RTCGA.rnaseq) BiocManager::install(RTCGA.CNV) BiocManager::install(RTCGA.RPPA) BiocManager::install(RTCGA.mRNA) BiocManager::install(RTCGA.miRNASeq) BiocManager::install(RTCGA.methylation) # use cases and examples + more data info browseVignettes('RTCGA') ## End(Not run)