summarize.sum {RPA} | R Documentation |
Probeset summarization with the standard sum method.
summarize.sum( taxonomy, level, probedata, verbose = TRUE, downweight.ambiguous.probes = TRUE )
taxonomy |
oligo - phylotype matching data.frame |
level |
taxonomic level for the summarization. |
probedata |
preprocessed probes x samples data matrix in absolute domain |
verbose |
print intermediate messages |
downweight.ambiguous.probes |
Downweight probes with multiple targets |
List with two elements: abundance.table (summarized data matrix in absolute scale) and probe.parameters used in the calculations
Contact: Leo Lahti microbiome-admin@googlegroups.com
See citation("microbiome")