summary.ROTS {ROTS} | R Documentation |
Summarizes the differential testing results from ROTS package.
## S3 method for class 'ROTS' summary(object, fdr=NULL, num.genes=NULL, verbose=TRUE, ...)
object |
a |
fdr |
selected cutoff for FDR value. |
num.genes |
selected cutoff number for number of differentially detected features. |
verbose |
If TRUE (default), summary function will print out 10 first detections which fulfill the cutoff criteria. |
... |
other arguments passed to the summary function. |
This function returns the summary information (including row number, test-statistic, pvalue and FDR value) for the selected features.
Returns a matrix where the rows are the selected features and columns are the Row number, ROTS-statistic, pvalue and FDR.
Fatemeh Seyednasrollah, Tomi Suomi, Laura L. Elo
Maintainer: Tomi Suomi <tomi.suomi@utu.fi>
Suomi T, Seyednasrollah F, Jaakkola MK, Faux T, Elo LL.
ROTS: An R package for reproducibility-optimized statistical testing.
PLoS Comput Biol 2017; 13: e1005562.
## ROTS-statistic for the Affymetrix spike-in data. rots.out <- ROTS(data = affySpikeIn, groups = c(rep(0,5), rep(1,5)), B = 100, K = 500 , seed = 1234) ## Summary of the ROTS results. rots.summary <- summary(rots.out, fdr = 0.05)