auxdata {RLSeq} | R Documentation |
A list containing data used by RLSeq functions. It can also be useful
for checking the available modes and genomes in RLSeq. See also the
data-raw/auxdata.R
script that was used to create it.
auxdata
An object of class list
of length 10.
A named list containing the following entries:
db_cols
A tbl
with colors associated with each database in RLHub
useful for plotting. See also RLHub::annotations.
annotypes
A tbl
containing the annotation databases and annotation types
available from RLBase. See also RLHub::annotations.
ip_cols
A tbl
containing the colors associated with each "Immunoprecipitation
type" (ip_type) in RLBase. See also RLHub::rlbase_samples.
mode_cols
A tbl
containing the colors associated with each R-loop mapping
mode in RLHub::rlbase_samples.
heat_cols
A tbl
containing the colors associated with user-supplied data and
RLBase data when running corrHeatmap.
label_cols
A tbl
containing the colors associated with the labels in
RLBase.
See also RLHub::rlbase_samples.
prediction_cols
A tbl
containing the colors associated with the predictions in
RLBase.
See also RLHub::rlbase_samples.
available_modes
A tbl
containing the modes available in RLBase and associated metadata.
See also RLHub::rlbase_samples.
available_genomes
A character
showing all the official UCSC genomes available for use
with RLSeq. See also available_genomes.
misc_modes
A character
showing the R-loop mapping modes that are lumped into
the 'misc' category for simplification of plotting.
auxdata