findEnrichedFunctions {RCAS} | R Documentation |
Find enriched functional terms among the genes that overlap the regions of interest.
findEnrichedFunctions(targetGenes, species, ...)
targetGenes |
Vector of Ensembl gene ids or gene names |
species |
First letter of genus + species name: e.g. hsapiens |
... |
Other arguments to be passed to gprofiler2::gost |
This function is basically a call to gprofiler2::gost function. It is here to serve as a replacement for other deprecated functional enrichment functions.
data(gff) data(queryRegions) overlaps <- queryGff(queryRegions, gff) res <- findEnrichedFunctions(unique(overlaps$gene_id), 'hsapiens')