createCurationFile {PureCN} | R Documentation |
Function to create a CSV file that can be used to mark the correct solution
in the output of a runAbsoluteCN
run.
createCurationFile( file.rds, overwrite.uncurated = TRUE, overwrite.curated = FALSE )
file.rds |
Output of the |
overwrite.uncurated |
Overwrite existing files unless flagged as ‘Curated’. |
overwrite.curated |
Overwrite existing files even if flagged as ‘Curated’. |
A data.frame
with the tumor purity and ploidy of the maximum
likelihood solution.
Markus Riester
data(purecn.example.output) file.rds <- "Sample1_PureCN.rds" saveRDS(purecn.example.output, file = file.rds) createCurationFile(file.rds)