callCIN {PureCN} | R Documentation |
This function provides detailed CIN information.
callCIN( res, id = 1, allele.specific = TRUE, reference.state = c("dominant", "normal") )
res |
Return object of the |
id |
Candidate solution to extract CIN from. |
allele.specific |
Use allele-specific or only total copy number for
detecting abnormal regions. Copy-number neutral LOH would be ignored when
this parameter is set to |
reference.state |
Copy number regions different from the reference
state are counted as abnormal. Default is |
Returns double(1)
with CIN value.
Markus Riester
data(purecn.example.output) head(callCIN(purecn.example.output))