mutantTranscripts {ProteoDisco}R Documentation

Adds mutant transcript sequences to the ProteoDiscography in the appropriate slot

Description

Adds mutant transcript sequences to the ProteoDiscography in the appropriate slot

Usage

mutantTranscripts(x)

Arguments

x

(ProteoDiscography): ProteoDiscography.

Value

Return all incorporated mutant transcripts (list of DataFrame).

Examples


# Import example ProteoDiscography (hg19)
data('ProteoDiscographyExample.hg19', package = 'ProteoDisco')
ProteoDiscographyExample.hg19 <- setTxDb(ProteoDiscographyExample.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene::TxDb.Hsapiens.UCSC.hg19.knownGene)
ProteoDiscographyExample.hg19 <- setGenomicSequences(ProteoDiscographyExample.hg19, BSgenome.Hsapiens.UCSC.hg19::BSgenome.Hsapiens.UCSC.hg19)

# Retrieve all generated mutant transcripts.
mutantTranscripts(ProteoDiscographyExample.hg19)


[Package ProteoDisco version 0.99.12 Index]