adjacency_matrix_from_list {PrInCE}R Documentation

Create an adjacency matrix from a list of complexes

Description

Convert a list of complexes into a pairwise adjacency matrix. The resulting square adjacency matrix contains ones for proteins that are found in the same complex and zeroes otherwise.

Usage

adjacency_matrix_from_list(complexes)

Arguments

complexes

a list of complexes, with each entry containing complex subunits as a character vector

Value

an adjacency matrix between all complex subunits

Examples

data(gold_standard)
adj <- adjacency_matrix_from_list(gold_standard)


[Package PrInCE version 1.9.0 Index]