importSampleSheet {PoDCall}R Documentation

importSampleSheet

Description

Function that takes a path to a .csv-file containing information about the samples that correspond to the uploaded amplitude files. This file must contain the following columns: Well, Sample, TargetType and Target. A character vector with well IDs must also be provided, which is used to match rows in sample sheet to amplitude files

Usage

importSampleSheet(sampleSheet = NULL, well_id = NULL)

Arguments

sampleSheet

Path to sample sheet file containg information about samples.

well_id

Character vector with well IDs corresponding to uploaded amplitude files.

Value

A matrix with columns for sample ID, target assay and control assay.

Examples

## Path to example sample sheet included in PoDCall
path <- system.file("extdata", "Sample_names.csv", package="PoDCall")

## Select wells to get information for
well_id <- c("A04", "B04", "D04")

## Get information for selected wells
sampleSheet <- importSampleSheet(sampleSheet=path, well_id=well_id)


[Package PoDCall version 1.1.5 Index]