fastaParser {PhyloProfile} | R Documentation |
Parse multi-fasta input file
fastaParser(inputFile = NULL)
inputFile |
input multiple fasta file. Check extdata/test.main.fasta or https://github.com/BIONF/PhyloProfile/wiki/Input-Data#multi-fasta-format for the supported FASTA header. |
A data frame of input data in long-format containing seed gene IDs ( or orthologous group IDs), their orthologous proteins together with the corresponding taxonomy IDs and values of (up to) two additional variables.
Vinh Tran tran@bio.uni-frankfurt.de
inputFile <- system.file( "extdata", "test.main.fasta", package = "PhyloProfile", mustWork = TRUE ) fastaParser(inputFile)