createLongMatrix {PhyloProfile} | R Documentation |
Create a long matrix format for all kinds of input phylogenetic profiles
createLongMatrix(inputFile = NULL)
inputFile |
input profile file in orthoXML, multiple FASTA, tab-delimited matrix format (wide or long). |
A data frame of input data in long-format containing seed gene IDs ( or orthologous group IDs), their orthologous proteins together with the corresponding taxonomy IDs and values of (up to) two additional variables.
Vinh Tran tran@bio.uni-frankfurt.de
xmlParser
, fastaParser
,
wideToLong
inputFile <- system.file( "extdata", "test.main.wide", package = "PhyloProfile", mustWork = TRUE ) createLongMatrix(inputFile)