getInputTaxaName {PhyloProfile} | R Documentation |
Get NCBI taxon names from "PhyloProfile/data/taxonNamesReduced.txt" for a list of input taxa
getInputTaxaName(rankName, taxonIDs = NULL)
rankName |
taxonomy rank (e.g. "species","phylum",...) |
taxonIDs |
list of taxon IDs (e.g. ncbi1234). Default = NULL |
Data frame contains a list of full names, taxonomy ranks and parent IDs for the input taxa.
Vinh Tran tran@bio.uni-frankfurt.de
getInputTaxaID
for getting input taxon IDs,
getNameList
for getting the full taxon name list
taxonIDs <- c("ncbi9606", "ncbi10116") getInputTaxaName("species", taxonIDs)