getFastaFromFile {PhyloProfile}R Documentation

Get fasta sequences from main input file in multi-fasta format

Description

Get fasta sequences from main input file in multi-fasta format

Usage

getFastaFromFile(seqIDs = NULL, concatFasta = NULL)

Arguments

seqIDs

list of sequences IDs. Set seqIDs = "all" if you want to get all fasta sequences from the concatenated input fasta file.

concatFasta

input concatenated fasta file.

Value

A dataframe with one column contains sequences in fasta format.

Author(s)

Vinh Tran tran@bio.uni-frankfurt.de

Examples

concatFasta <- system.file(
    "extdata", "fastaFiles/concatenatedFile.fa",
    package = "PhyloProfile", mustWork = TRUE
)
getFastaFromFasInput("all", concatFasta)

[Package PhyloProfile version 1.8.1 Index]