xmlParser {PhyloProfile}R Documentation

Parse orthoXML input file

Description

Parse orthoXML input file

Usage

xmlParser(inputFile = NULL)

Arguments

inputFile

input file in xml format

Value

A data frame of input data in long-format containing seed gene IDs ( or orthologous group IDs), their orthologous proteins together with the corresponding taxonomy IDs and values of (up to) two additional variables.

Author(s)

Vinh Tran tran@bio.uni-frankfurt.de

Examples

inputFile <- system.file(
    "extdata", "test.main.xml", package = "PhyloProfile", mustWork = TRUE
)
xmlParser(inputFile)

[Package PhyloProfile version 1.8.0 Index]