getDataForOneOma {PhyloProfile} | R Documentation |
Get taxonomy IDs, sequences, length and annotations for an OMA orthologous group (or OMA HOG).
getDataForOneOma(seedID = NULL, orthoType = "OG")
seedID |
OMA protein ID |
orthoType |
type of OMA orthologs ("OG" or "HOG"). Default = "OG". |
Data frame contains info for all sequences of the input OMA group (or HOG). That info contains the protein IDs, taxonomy IDs, sequences, lengths, domain annotations (tab delimited) and the corresponding seed ID.
Vinh Tran tran@bio.uni-frankfurt.de
print("Uncomment the following line to run the function") # getDataForOneOma("HUMAN29397", "OG")