PharmacoSet-utils {PharmacoGx} | R Documentation |
PharmacoSet
object.Documentation for utility methods for a PharmacoSet
object, such as
set operations like subset and intersect. See @details for information
on different types of methods and their implementations.
## S4 method for signature 'PharmacoSet' subsetBySample(x, samples) ## S4 method for signature 'PharmacoSet' subsetByTreatment(x, treatments) ## S4 method for signature 'PharmacoSet' subsetByFeature(x, features, mDataTypes)
x |
A |
samples |
|
treatments |
|
features |
|
mDataTypes |
|
subsetBySample: Subset a PharmacoSet
object by sample identifier.
value: a PharmacoSet
object containing only samples
.
subsetByTreatment: Subset a PharmacoSet
object by treatment identifier.
value: a PharmacoSet
object containing only treatments
.
subsetByFeature: Subset a PharmacoSet
object by molecular feature
identifier.
value: a PharmacoSet
object containing only features
.
See details.
data(CCLEsmall) ## subset methods ### subsetBySample samples <- cellInfo(CCLEsmall)$cellid[seq_len(10)] CCLEsmall_sub <- subsetBySample(CCLEsmall, samples) ## subset methods ### subsetByTreatment #treatments <- drugInfo(CCLEsmall)$drugid[seq_len(10)] #CCLEsmall_sub <- subsetByTreatment(CCLEsmall, treatments) ## subset methods ### subsetByFeature features <- fNames(CCLEsmall, 'rna')[seq_len(5)] CCLEsmall_sub <- subsetByFeature(CCLEsmall, features, 'rna')