getBackgroundFrequencies {PWMEnrich} | R Documentation |
Estimate the background frequencies of A,C,G,T on a set of promoters from an organism
getBackgroundFrequencies(organism = "dm3", pseudo.count = 1, quick = FALSE)
organism |
either a name of the organisms for which the background should be compiled
(supported names are "dm3", "mm9" and "hg19"), a |
pseudo.count |
the number to which the frequencies sum up to, by default 1 |
quick |
if to preform fitting on a reduced set of 100 promoters. This will not give as good results but is much quicker than fitting to all the promoters (~10k). Usage of this parameter is recommended only for testing and rough estimates. |
Robert Stojnic, Diego Diez
## Not run: getBackgroundFrequencies("dm3") ## End(Not run)