plotPowerHist {PROPER} | R Documentation |
Using histogram-alike graph to visualize the distribution of all genes and DE genes in all user specified strata.
plotPowerHist(powerOutput, simResult, main = "Histogram of power", return = FALSE)
powerOutput |
Result object from "comparePower" function. |
simResult |
Result object from "runSims" function. |
main |
Figure caption. |
return |
Return a matrix for average number of genes and true DE genes in each strata. |
A matrix of two rows. First row is for number of genes, and the second row is for number of DE genes. Columns are strata.
Hao Wu <hao.wu@emory.edu>
## Not run: simOptions = RNAseq.SimOptions.2grp() ## run a few simulations simRes = runSims(Nreps=c(3,5,7), sim.opts=simOptions, nsims=5, DEmethod="edgeR") ## using FDR 0.1 to call DE, then look at power curves and summary powers = comparePower(simRes) plotPowerHist(powers, simRes) ## End(Not run)