ORA {PPInfer} | R Documentation |
the result from the over-representation analysis
ORA(pathways, gene.id, minSize = 1, maxSize = Inf, p.adjust.methods = NULL)
pathways |
list of gene sets |
gene.id |
set of genes |
minSize |
Minimal size of a gene set |
maxSize |
Maximal size of a gene set |
p.adjust.methods |
a correction method |
ORA result
Dongmin Jung, Xijin Ge
fisher.test
data(examplePathways) data(exampleRanks) geneNames <- names(exampleRanks) set.seed(1) gene.id <- sample(geneNames, 100) ORA(examplePathways, gene.id)