ORA {PPInfer}R Documentation

Over-representation Analysis

Description

the result from the over-representation analysis

Usage

ORA(pathways, gene.id, minSize = 1, maxSize = Inf,
    p.adjust.methods = NULL)

Arguments

pathways

list of gene sets

gene.id

set of genes

minSize

Minimal size of a gene set

maxSize

Maximal size of a gene set

p.adjust.methods

a correction method

Value

ORA result

Author(s)

Dongmin Jung, Xijin Ge

See Also

fisher.test

Examples

data(examplePathways)
data(exampleRanks)
geneNames <- names(exampleRanks)
set.seed(1)
gene.id <- sample(geneNames, 100)
ORA(examplePathways, gene.id)

[Package PPInfer version 1.20.3 Index]