segReadsListPE-class {PICS}R Documentation

Class and methods for list of candidate regions from paired-end data

Description

Class and methods for list of candidate regions from paired-end data

Usage

segReadsListPE(List, paraSW, N, NFm, NRm, Nc, NcFm, NcRm)

## S4 method for signature 'segReadsListPE,ANY,ANY,ANY'
x[i, j, ..., drop = FALSE]

## S4 method for signature 'segReadsListPE,ANY,ANY'
x[[i, j, ..., exact = TRUE]]

Arguments

List

A list of segReadsPE objects.

paraSW

A list of parameters for the genomic regions.

N, NFm, NRm

Read counts in the data.

Nc, NcFm, NcRm

Read counts in the control.

x, i, j, ..., drop, exact

Arguments passed to subset methods

Functions


[Package PICS version 2.37.0 Index]