kegg_download {PFP}R Documentation

download kegg KGML files

Description

This function will download all kegg KGML files assigned by spec.

Usage

kegg_download(spec, file_root = ".", test_mode = FALSE)

Arguments

spec,

a character, refers to the species names in kegg, such as "hsa", "mmu"...

file_root,

a character,refers to the root you want to save kegg pathway kgml files in.

test_mode,

please set whether to test this function.

Details

Downloading all kegg KGML files assigned by spec from https://www.kegg.jp/kegg/xml/, which may take tens of minutes.

Value

the kegg KGML files

Examples

kegg_download(spec,file_root=".", test_mode=TRUE)

[Package PFP version 1.1.0 Index]