PFP-class {PFP}R Documentation

PFP-class

Description

An S4 object for storing pathway fingerprint scores information.

Slots

pathways_score,

a list contains PFP_score, stats_test, genes_score. PFP_score is a numeric score indicating the performance of a gene_list in some pathways.stats_test is a statistic test for the PFP_score. genes_score is the detail scores of every gene in the gene_list.

refnet_info,

a data.frame, which contains the specific information of pathway networks. Just be the same as net_info in PFPRefnet-class, including the index, id, name, group and species.

method

See Also

pathways_score-methods, refnet_info-methods,PFP_score-methods, stats_test-methods, genes_score-methods, refnet_names-methods, sub_PFP-methods, show_PFP-methods, plot_PFP-methods, rank_PFP-methods,

Examples

data(PFP_test1)
PFP_test1

[Package PFP version 1.1.0 Index]