getTopFeatures,PCOSP-method {PDATK}R Documentation

Get the top features for classification using a PCOSP model object.

Description

Get the top features for classification using a PCOSP model object.

Usage

## S4 method for signature 'PCOSP'
getTopFeatures(object, numModels)

Arguments

object

A PCOSP model object which has been trained with trainModel.

numModels

An integer specifying the number of top models to use features from. Defaults to top 10% of KTSPs models.

Value

A character vector of gene names representing the unique genes from the top numModels KTSPs models in the model object.

Examples

data(sampleTrainedPCOSPmodel)

# Get the top features
topFeatures <- getTopFeatures(sampleTrainedPCOSPmodel, numModels=5)


[Package PDATK version 1.1.3 Index]