normalize,MultiAssayExperiment-method {PDATK} | R Documentation |
assays
of a MutliAssayExperiment
ObjectFor this method to work, there must be a normalize
method defined
for all classes of experiments in the MultiAssayExperiment
## S4 method for signature 'MultiAssayExperiment' normalize( object, MARGIN = 2, FUN = "preprocessCaret", ..., whichAssays = seq_along(assays(object)) )
object |
A |
MARGIN |
An |
FUN |
A function to normalize your data with. Should accept a
rectangular object such as a |
... |
Fall through parameters to FUN. For the default FUN, these are
passed to |
whichAssays |
A |
When using the default FUN, it is also possible to impute missing values.
See ?caret::preProcess
for information on available methods.
The MultiAssayExperiment
with one or more of the assays normalized
and information about the normalization method in the normalization
item
of the object metadata
.
preprocessCaret
, caret::preProcess