nichenet_signaling_network_harmonizome {OmnipathR} | R Documentation |
Builds signaling network prior knowledge for NicheNet using Harmonizome
nichenet_signaling_network_harmonizome( datasets = c("phosphositeplus", "kea", "depod"), ... )
datasets |
The datasets to use. For possible values please refer to default value and the Harmonizome webpage. |
... |
Ignored. |
A network data frame (tibble) with signaling interactions suitable for use with NicheNet.
# use only KEA and PhosphoSite: hz_signaling_network <- nichenet_signaling_network_harmonizome( datasets = c('kea', 'phosphositeplus') )