guide2pharma_download {OmnipathR} | R Documentation |
Downloads ligand-receptor interactions from the Guide to Pharmacology (IUPHAR/BPS) database (https://www.guidetopharmacology.org/).
guide2pharma_download()
A tibble (data frame) of interactions as it is provided by the database
g2p_data <- guide2pharma_download() g2p_data # # A tibble: 21,586 x 38 # target target_id target_gene_sym. target_uniprot target_ensembl_. # <chr> <dbl> <chr> <chr> <chr> # 1 12S-L. 1387 ALOX12 P18054 ENSG00000108839 # 2 15-LO. 1388 ALOX15 P16050 ENSG00000161905 # 3 15-LO. 1388 ALOX15 P16050 ENSG00000161905 # 4 15-LO. 1388 ALOX15 P16050 ENSG00000161905 # # . with 21,576 more rows, and 33 more variables: target_ligand <chr>, # # target_ligand_id <chr>, target_ligand_gene_symbol <chr>, # ... (truncated)