nichenet_signaling_network_cpdb {OmnipathR} | R Documentation |
Builds signaling network prior knowledge using ConsensusPathDB (CPDB) data. Note, the interactions from CPDB are not directed and many of them comes from complex expansion. Find out more at http://cpdb.molgen.mpg.de/.
nichenet_signaling_network_cpdb(...)
... |
Passed to |
A network data frame (tibble) with signaling interactions suitable for use with NicheNet.
# use some parameters stricter than default: cpdb_signaling_network <- nichenet_signaling_network_cpdb( complex_max_size = 2, min_score = .99 )