OmaDB-deprecated {OmaDB} | R Documentation |
These functions are provided for compatibility with older versions of OmaDB only, and will be defunct at the next release.
getXref(pattern) getAnnotation(query) getGenomeAlignment(genome1, genome2, chr1 = NULL, chr2 = NULL, rel_type = NULL) getData(type, id, attribute = NULL)
The following functions are deprecated and will be made defunct; use the replacement indicated below:
getXref
For getXref
, use searchProtein
.
getAnnotation
For getAnnotation
, use annotateSequence
.
getGenomeAlignment
For getGenomeAlignment
, use getGenomePairs
.
getData
For getData
, use getProtein, getGenome, getOMAGroup
.