permfunc {OVESEG} | R Documentation |
Internal function for one permutation task
permfunc(p, y, group, weights, alpha, combM, geneSubset, seeds)
p |
an integer indicating permutation index |
y |
an expressions matrix |
group |
a integer vector indicating group labels |
weights |
optional numeric matrix containing prior weights |
alpha |
parameter specifying within-group variance estimator to be used |
combM |
a integer matrix with each row giving one choice of M groups |
geneSubset |
a integer vector indicating the probe pattern of combM |
seed |
an integer seed for the random number generator |
test statistics and upregulated group indexes after one permutaion