export.bedo {ORFik} | R Documentation |
.bedo is .bed ORFik, an optimized bed format for coverage reads with
read lengths .bedo is a text based format with columns (6 maximum):
1. chromosome
2. start
3. end
4. strand
5. ref width (cigar # M's, match/mismatch total)
6. duplicates of that read
export.bedo(object, out)
object |
a GRanges object |
out |
a character, location on disc (full path) |
Positions are 1-based, not 0-based as .bed. End will be removed if all ends equals all starts. Import with import.bedo
NULL, object saved to disc