list.genomes {ORFik} | R Documentation |
Given the reference.folder, list all valid references.
list.genomes(reference.folder = ORFik::config()["ref"])
reference.folder |
character path, default:
|
a data.table with 4 columns:
- character (name of folder)
- logical (does it have a gtf)
- logical (does it have a fasta genome)
- logical (does it have a STAR index)
## Run with default config path #list.genomes() ## Run with custom config path list.genomes(tempdir())