experiment.colors {ORFik}R Documentation

Decide color for libraries by grouping

Description

Pick the grouping wanted for colors, by default only group by libtype. Like RNA-seq(skyblue4) and Ribo-seq(orange).

Usage

experiment.colors(
  df,
  color_list = "default",
  skip.libtype = FALSE,
  skip.stage = TRUE,
  skip.replicate = TRUE,
  skip.fraction = TRUE,
  skip.condition = TRUE
)

Arguments

df

an ORFik experiment

color_list

a character vector of colors, default "default". That is the vector c("skyblue4", 'orange', "green", "red", "gray", "yellow", "blue", "red2", "orange3"). Picks number of colors needed to make groupings have unique color

skip.libtype

a logical (FALSE), if TRUE don't include libtype

skip.stage

a logical (FALSE), if TRUE don't include stage in variable name.

skip.replicate

a logical (FALSE), if TRUE don't include replicate in variable name.

skip.fraction

a logical (FALSE), if TRUE don't include fraction

skip.condition

a logical (FALSE), if TRUE don't include condition in variable name.

Value

a character vector of colors


[Package ORFik version 1.13.14 Index]