QCstats.plot {ORFik} | R Documentation |
From post-alignment QC relative to annotation, make a plot for all samples. Will contain among others read lengths, reads overlapping leaders, cds, trailers, mRNA / rRNA etc.
QCstats.plot(stats, output.dir = NULL, plot.ext = ".pdf")
stats |
the experiment object or path to custom ORFik QC folder where a file called "STATS.csv" is located. |
output.dir |
NULL or character path, default: NULL, plot not saved to disc. If defined saves plot to that directory with the name "/STATS_plot.pdf". |
plot.ext |
character, default: ".pdf". Alternatives: ".png" or ".jpg". |
ggplot object of the the statistics data
df <- ORFik.template.experiment()[3,] ## First make QC report # QCreport(df) ## Now you can get plot # QCstats.plot(df)