config {ORFik}R Documentation

Read directory config for ORFik experiments

Description

Defines a folder for: 1. fastq files (raw_data)
2. bam files (processed data)
3. references (organism annotation and STAR index)

Usage

config(file = "~/Bio_data/ORFik_config.csv")

Arguments

file

file of config for ORFik, default: "~/Bio_data/ORFik_config.csv"

Details

Update or use another config using config.save() function.

Value

a named character vector of length 3

Examples

## Make with default config path
#config()
## Load another config (not adviced!)
config_location <- "/media/Bio_data/ORFik_config.csv"
#config(config_location)

[Package ORFik version 1.13.14 Index]