trim_detection {ORFik} | R Documentation |
Add trimming info to QC report
Description
Only works if alignment was done using ORFik with STAR.
Usage
trim_detection(df, finals, out.dir)
Arguments
df |
an ORFik experiment
|
finals |
a data.table with current output from QCreport
|
out.dir |
optional output directory, default:
dirname(df$filepath[1]) .
Will make a folder called "QC_STATS" with all results in this directory.
Warning: If you assign not default path, you will have a hazzle to load files later.
Much easier to load count tables, statistics, ++ later with default.
|
Value
a data.table of the update finals object with trim info
[Package
ORFik version 1.13.14
Index]