codonStartStop {ORFhunteR}R Documentation

Identify all potential start and stop codons in a nucleotide sequence

Description

This function scans a nucleotide sequence of interest in the search of canonical start codon ATG or non-canonical start codons GTG, TTG and CTG as well as stop codons TAA, TAG and TGA.

Usage

codonStartStop(x)

Arguments

x

character string giving the nucleotide sequence.

Value

list of potential start and stop codons with their coordinates.

Author(s)

Vasily V. Grinev

Examples

codons <- codonStartStop(x = "AAAATGGCATGGTAAGTC")

[Package ORFhunteR version 1.1.0 Index]